Variant report

Variant	rs12253190
Chromosome Location	chr10:89770541-89770542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10082505	1.00[AMR][1000 genomes]
rs12242772	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12243171	1.00[AMR][1000 genomes]
rs12267986	1.00[CEU][hapmap]
rs12355559	1.00[CEU][hapmap]
rs34365974	1.00[AMR][1000 genomes]
rs35847579	1.00[AMR][1000 genomes]
rs73336622	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551837	chr10:89707265-89777788	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89758400-89785800	Weak transcription	Aorta	Aorta
2	chr10:89765000-89772000	Weak transcription	NHDF-Ad	bronchial
3	chr10:89765000-89774200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:89769200-89772400	Weak transcription	NHLF	lung
5	chr10:89769200-89772600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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