Variant report

Variant	rs1225711
Chromosome Location	chr6:28099351-28099352
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27859448..27862315-chr6:28097883..28100561,2	K562	blood:
2	chr6:28024391..28026984-chr6:28098604..28100531,2	MCF-7	breast:
3	chr6:28098585..28101126-chr6:28317174..28319178,2	K562	blood:
4	chr6:28098221..28099883-chr6:28348918..28351398,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197153	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000189298	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1150672	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1150674	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1150676	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1150680	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1150683	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1150684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1225594	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1225709	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1237873	0.96[AFR][1000 genomes]
rs1416997	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1480646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs149957	0.88[AFR][1000 genomes]
rs1613149	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1654777	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1654778	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs169432	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs169433	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs172164	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1770130	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1770133	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1871695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs203865	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs203868	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs203870	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs203871	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs203875	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs203881	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs203885	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs203891	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs203894	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2622321	0.98[AFR][1000 genomes]
rs2791334	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs370266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs392665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs427348	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs539474	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57349346	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58909320	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73740569	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73740570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73742609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348791	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348795	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9366714	0.88[ASN][1000 genomes]
rs9368562	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9393905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28092800-28101800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:28092800-28103800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:28092800-28103800	Weak transcription	Ovary	ovary
4	chr6:28092800-28104000	Weak transcription	Aorta	Aorta
5	chr6:28092800-28104000	Weak transcription	Small Intestine	intestine
6	chr6:28092800-28104200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:28093000-28100200	Weak transcription	Brain Anterior Caudate	brain
8	chr6:28093000-28100800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:28093000-28103200	Weak transcription	NHLF	lung
10	chr6:28093000-28103800	Weak transcription	Psoas Muscle	Psoas
11	chr6:28093000-28104000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:28093000-28104200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:28093200-28102400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:28093200-28103200	Weak transcription	HMEC	breast
15	chr6:28093200-28103600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:28093400-28100600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:28093400-28102600	Weak transcription	NHDF-Ad	bronchial
18	chr6:28093400-28103200	Weak transcription	NHEK	skin
19	chr6:28093400-28103400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr6:28093600-28100200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:28093600-28101200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr6:28093600-28101200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr6:28093600-28101400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr6:28093600-28102200	Weak transcription	Brain Substantia Nigra	brain
25	chr6:28093600-28102600	Weak transcription	Right Ventricle	heart
26	chr6:28093600-28103200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:28093600-28103200	Weak transcription	Right Atrium	heart
28	chr6:28093600-28104000	Weak transcription	Fetal Intestine Small	intestine
29	chr6:28093600-28104200	Weak transcription	Pancreas	Pancrea
30	chr6:28093600-28104400	Weak transcription	Esophagus	oesophagus
31	chr6:28093600-28104400	Weak transcription	Gastric	stomach
32	chr6:28093800-28099600	Strong transcription	Fetal Thymus	thymus
33	chr6:28093800-28100600	Strong transcription	Primary B cells from peripheral blood	blood
34	chr6:28093800-28101400	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr6:28093800-28101600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr6:28093800-28101600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:28093800-28102600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr6:28093800-28103200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:28093800-28104000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:28093800-28104200	Weak transcription	Lung	lung
41	chr6:28094000-28101000	Strong transcription	Fetal Muscle Leg	muscle
42	chr6:28094000-28101400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr6:28094200-28101000	Strong transcription	Primary B cells from cord blood	blood
44	chr6:28094400-28099600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr6:28094400-28099800	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr6:28094400-28101800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr6:28094400-28104000	Weak transcription	Colonic Mucosa	Colon
48	chr6:28094600-28103200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr6:28094800-28101800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr6:28094800-28102200	Strong transcription	Primary T cells from cord blood	blood

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