Variant report

Variant	rs73742609
Chromosome Location	chr6:28072354-28072355
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:24)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28070967..28073548-chr6:28102137..28104053,2	K562	blood:
2	chr6:28071044..28072860-chr6:28179957..28182253,2	K562	blood:
3	chr6:27807137..27809779-chr6:28070833..28072678,2	K562	blood:
4	chr6:28070926..28073280-chr6:28104096..28106207,2	K562	blood:
5	chr6:27858668..27861040-chr6:28071241..28073532,3	K562	blood:
6	chr6:27865036..27871044-chr6:28071199..28075672,5	K562	blood:
7	chr6:28054146..28055764-chr6:28072126..28074128,2	K562	blood:
8	chr6:27777050..27779822-chr6:28071023..28072819,2	K562	blood:
9	chr6:28071334..28077239-chr6:28089535..28095129,7	MCF-7	breast:
10	chr6:28071987..28074599-chr6:28081357..28083551,2	MCF-7	breast:
11	chr6:28072063..28073906-chr6:28581888..28585717,3	K562	blood:
12	chr6:28061840..28064330-chr6:28071288..28073320,3	K562	blood:
13	chr6:28069766..28072466-chr6:28092411..28094495,2	MCF-7	breast:
14	chr6:28072263..28073986-chr6:28075857..28078538,2	MCF-7	breast:
15	chr6:28058540..28063107-chr6:28071049..28073902,4	MCF-7	breast:
16	chr6:27778322..27779984-chr6:28071319..28073386,2	K562	blood:
17	chr6:28060520..28063673-chr6:28071288..28074730,3	K562	blood:
18	chr6:28047190..28049373-chr6:28071837..28074142,3	MCF-7	breast:
19	chr6:28070830..28074243-chr6:28303566..28305711,3	K562	blood:
20	chr6:28064931..28068898-chr6:28069677..28072744,5	K562	blood:
21	chr6:28047065..28050111-chr6:28070464..28074752,7	MCF-7	breast:
22	chr6:28071483..28073746-chr6:28184595..28186783,2	K562	blood:
23	chr6:28072038..28073860-chr6:28648173..28650609,2	K562	blood:
24	chr6:28047642..28050085-chr6:28071642..28073977,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000269293	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000272009	Chromatin interaction
ENSG00000232040	Chromatin interaction
ENSG00000219891	Chromatin interaction
ENSG00000176933	Chromatin interaction
ENSG00000261839	Chromatin interaction
ENSG00000238610	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000219392	Chromatin interaction
ENSG00000197279	Chromatin interaction
ENSG00000235109	Chromatin interaction
ENSG00000196812	Chromatin interaction
ENSG00000203813	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1150672	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1150674	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1150676	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1150680	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1150683	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1150684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1225594	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1225709	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1225711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1237873	0.96[AFR][1000 genomes]
rs1416997	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1480646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs149957	0.88[AFR][1000 genomes]
rs1613149	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1654777	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1654778	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs169432	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs169433	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs172164	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1770130	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1770133	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1871695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs203865	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs203868	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs203870	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs203871	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs203875	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs203881	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs203885	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs203891	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs203894	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2622321	0.98[AFR][1000 genomes]
rs2791334	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs370266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs392665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs427348	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs539474	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57349346	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58909320	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73740569	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73740570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9348791	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348795	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9366714	0.88[ASN][1000 genomes]
rs9368562	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9393905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28071600-28073000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:28071800-28072800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:28071800-28072800	Active TSS	Liver	Liver
4	chr6:28071800-28072800	Active TSS	K562	blood
5	chr6:28071800-28073000	Active TSS	Fetal Kidney	kidney
6	chr6:28071800-28073200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:28071800-28073200	Active TSS	GM12878-XiMat	blood
8	chr6:28072000-28072400	Flanking Active TSS	Primary T cells from cord blood	blood
9	chr6:28072000-28072400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
10	chr6:28072000-28072400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
11	chr6:28072000-28072400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
12	chr6:28072000-28072400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
13	chr6:28072000-28072400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:28072000-28072400	Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr6:28072000-28072400	Flanking Active TSS	Hela-S3	cervix
16	chr6:28072000-28072800	Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr6:28072000-28072800	Active TSS	Primary T cells fromperipheralblood	blood
18	chr6:28072000-28072800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
19	chr6:28072000-28072800	Active TSS	Adipose Nuclei	Adipose
20	chr6:28072000-28072800	Active TSS	Rectal Smooth Muscle	rectum
21	chr6:28072000-28072800	Active TSS	HUVEC	blood vessel
22	chr6:28072000-28072800	Active TSS	Monocytes-CD14+_RO01746	blood
23	chr6:28072000-28072800	Active TSS	NHEK	skin
24	chr6:28072000-28073000	Active TSS	H1 Cell Line	embryonic stem cell
25	chr6:28072000-28073000	Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr6:28072000-28073000	Active TSS	HUES64 Cell Line	embryonic stem cell
27	chr6:28072000-28073000	Active TSS	iPS-15b Cell Line	embryonic stem cell
28	chr6:28072000-28073000	Active TSS	iPS-18 Cell Line	embryonic stem cell
29	chr6:28072000-28073000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:28072000-28073000	Active TSS	Primary B cells from peripheral blood	blood
31	chr6:28072000-28073000	Active TSS	Brain Anterior Caudate	brain
32	chr6:28072000-28073000	Active TSS	Brain Hippocampus Middle	brain
33	chr6:28072000-28073000	Active TSS	Duodenum Mucosa	Duodenum
34	chr6:28072000-28073000	Active TSS	Fetal Stomach	stomach
35	chr6:28072000-28073000	Active TSS	Rectal Mucosa Donor 31	rectum
36	chr6:28072000-28073000	Active TSS	Stomach Smooth Muscle	stomach
37	chr6:28072000-28073000	Active TSS	NH-A	brain
38	chr6:28072000-28073000	Active TSS	Osteobl	bone
39	chr6:28072000-28073200	Active TSS	ES-I3 Cell Line	embryonic stem cell
40	chr6:28072000-28073200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:28072000-28073200	Active TSS	HUES48 Cell Line	embryonic stem cell
42	chr6:28072000-28073200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:28072000-28073200	Active TSS	Breast Myoepithelial Primary Cells	Breast
44	chr6:28072000-28073200	Flanking Active TSS	Primary B cells from cord blood	blood
45	chr6:28072000-28073200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
46	chr6:28072000-28073200	Active TSS	Duodenum Smooth Muscle	Duodenum
47	chr6:28072000-28073200	Active TSS	Fetal Brain Male	brain
48	chr6:28072000-28073200	Active TSS	Fetal Intestine Large	intestine
49	chr6:28072000-28073200	Active TSS	Fetal Lung	lung
50	chr6:28072000-28073200	Active TSS	Psoas Muscle	Psoas

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