Variant report

Variant	rs12258351
Chromosome Location	chr10:45570434-45570435
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12246223	1.00[AMR][1000 genomes]
rs12263839	1.00[AMR][1000 genomes]
rs56244069	1.00[AMR][1000 genomes]
rs61203275	1.00[AMR][1000 genomes]
rs74128118	1.00[AMR][1000 genomes]
rs74128119	1.00[AMR][1000 genomes]
rs74128177	1.00[AMR][1000 genomes]
rs74128187	1.00[AMR][1000 genomes]
rs74128190	1.00[AMR][1000 genomes]
rs74128194	1.00[AMR][1000 genomes]
rs74131510	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831848	chr10:45490176-45667670	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv971917	chr10:45547355-45595482	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45569000-45571000	Weak transcription	Primary T cells from cord blood	blood
2	chr10:45569600-45570600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:45569600-45570800	Enhancers	Primary hematopoietic stem cells	blood
4	chr10:45569600-45570800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:45569800-45571200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr10:45570400-45573200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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