Variant report

Variant	rs12263839
Chromosome Location	chr10:45563315-45563316
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12246223	1.00[AMR][1000 genomes]
rs12257275	0.84[AFR][1000 genomes]
rs12258351	1.00[AMR][1000 genomes]
rs56244069	1.00[AMR][1000 genomes]
rs61203275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74128118	1.00[AMR][1000 genomes]
rs74128119	1.00[AMR][1000 genomes]
rs74128177	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74128187	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74128190	1.00[AMR][1000 genomes]
rs74128194	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74131510	1.00[AMR][1000 genomes]
rs7915377	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831848	chr10:45490176-45667670	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv971917	chr10:45547355-45595482	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45559400-45565800	Weak transcription	Adipose Nuclei	Adipose
2	chr10:45560200-45566600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:45560600-45566200	Weak transcription	Placenta	Placenta
4	chr10:45563200-45563800	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links