Variant report

Variant	rs74128187
Chromosome Location	chr10:45567063-45567064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFYB	chr10:45566750-45567090	K562	blood:	n/a	chr10:45566928-45566942 chr10:45566927-45566942 chr10:45566930-45566940 chr10:45566927-45566942
2	CTCF	chr10:45566920-45567150	GM06990	blood:	n/a	n/a
3	JUND	chr10:45567010-45567180	HepG2	liver:	n/a	n/a
4	TEAD4	chr10:45566927-45567207	H1-hESC	embryonic stem cell:	n/a	n/a
5	TEAD4	chr10:45566933-45567301	H1-hESC	embryonic stem cell:	n/a	n/a
6	CTCF	chr10:45567020-45567170	HEK293	kidney:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:45567048-45567098	HRE	kidney:	n/a
2	chr10:45567048-45567098	MCF-7	breast:	n/a
3	chr10:45567048-45567098	K562	blood:	n/a
4	chr10:45567048-45567098	RPTEC	kidney:	n/a
5	chr10:45567048-45567098	T-47D	breast:	n/a
6	chr10:45567048-45567098	Jurkat	blood:	n/a
7	chr10:45567048-45567098	SKMC	muscle:	n/a
8	chr10:45567048-45567098	GM19239	blood:	n/a
9	chr10:45567048-45567098	HepG2	liver:	n/a
10	chr10:45567048-45567098	Caco-2	colon:	n/a
11	chr10:45567048-45567098	HPAEpiC	pulmonary alveolar:	n/a
12	chr10:45567048-45567098	GM06990	blood:	n/a
13	chr10:45567048-45567098	IMR90	lung:	fetal
14	chr10:45567048-45567098	PrEC	prostate:	n/a
15	chr10:45567048-45567098	HAEpiC	amniotic membrane:	n/a
16	chr10:45567048-45567098	AG09319	gingival:	n/a
17	chr10:45567048-45567098	PANC-1	pancreas:	n/a
18	chr10:45567048-45567098	GM12878	blood:	n/a
19	chr10:45567048-45567098	HCF	heart:	n/a
20	chr10:45567048-45567098	NHBE	bronchial:	n/a
21	chr10:45567048-45567098	HEK293	kidney:	embryo
22	chr10:45567048-45567098	ProgFib	skin:	n/a
23	chr10:45567048-45567098	SK-N-SH_RA	brain:	n/a
24	chr10:45567048-45567098	HL-60	blood:	n/a
25	chr10:45567048-45567098	HCT-116	colon:	n/a
26	chr10:45567048-45567098	ECC-1	luminal epithelium:	n/a
27	chr10:45567048-45567098	AG10803	skin:	n/a
28	chr10:45567048-45567098	PFSK-1	brain:	n/a
29	chr10:45567048-45567098	SK-N-SH	brain:	n/a
30	chr10:45567048-45567098	HUVEC	blood vessel:	n/a
31	chr10:45567048-45567098	NH-A	brain:	n/a
32	chr10:45567048-45567098	CMK	blood:	n/a
33	chr10:45567048-45567098	NT2-D1	testis:	n/a
34	chr10:45567048-45567098	U87	brain:	n/a
35	chr10:45567048-45567098	HCPEpiC	choroid plexus:	n/a
36	chr10:45567048-45567098	BJ	skin:	n/a
37	chr10:45567048-45567098	AG04449	skin:	fetal
38	chr10:45567048-45567098	AoSMC	blood vessel:	n/a
39	chr10:45567048-45567098	HCM	heart:	n/a
40	chr10:45567048-45567098	NHDF-neo	bronchial:	n/a
41	chr10:45567048-45567098	SAEC	small airway:	n/a
42	chr10:45567048-45567098	AG09309	skin:	n/a
43	chr10:45567048-45567098	BE2_C	brain:	n/a
44	chr10:45567048-45567098	GM12892	blood:	n/a
45	chr10:45567048-45567098	HMEC	breast:	n/a
46	chr10:45567048-45567098	LNCaP	prostate:	n/a
47	chr10:45567048-45567098	GM12891	blood:	n/a
48	chr10:45567048-45567098	H1-hESC	embryonic stem cell:	embryo
49	chr10:45567048-45567098	A549	lung:	n/a
50	chr10:45567048-45567098	ovcar-3	ovarian:	n/a

No data

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C10orf25-2	chr10:45566996-45567068	NONHSAT013065
2	lnc-C10orf25-2	chr10:45567013-45567068	NONHSAT013067

No data

Variant related genes	Relation type
CEP164P1	TF binding region
CEP164P1	CpG island

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11239345	1.00[ASN][1000 genomes]
rs11239346	1.00[ASN][1000 genomes]
rs12246223	1.00[AMR][1000 genomes]
rs12258351	1.00[AMR][1000 genomes]
rs12263839	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56244069	1.00[AMR][1000 genomes]
rs61203275	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287558	1.00[ASN][1000 genomes]
rs74128118	1.00[AMR][1000 genomes]
rs74128119	1.00[AMR][1000 genomes]
rs74128177	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74128190	1.00[AMR][1000 genomes]
rs74128194	1.00[AMR][1000 genomes]
rs74131510	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831848	chr10:45490176-45667670	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv971917	chr10:45547355-45595482	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45566800-45567200	Flanking Active TSS	Placenta	Placenta

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