Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45551775..45554609-chr10:45555349..45558284,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C10orf25-2	chr10:45557710-45558032	NONHSAT013065

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11239303	0.91[EUR][1000 genomes]
rs11239305	0.91[EUR][1000 genomes]
rs11239307	0.94[EUR][1000 genomes]
rs11239308	0.94[EUR][1000 genomes]
rs11239309	0.97[EUR][1000 genomes]
rs11239311	1.00[EUR][1000 genomes]
rs11239315	1.00[EUR][1000 genomes]
rs11239319	1.00[EUR][1000 genomes]
rs11239323	1.00[EUR][1000 genomes]
rs11239324	1.00[EUR][1000 genomes]
rs11239342	1.00[EUR][1000 genomes]
rs11239343	1.00[EUR][1000 genomes]
rs11239346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12354652	1.00[EUR][1000 genomes]
rs12358699	1.00[EUR][1000 genomes]
rs12359377	1.00[EUR][1000 genomes]
rs12359697	0.91[EUR][1000 genomes]
rs17157322	0.91[EUR][1000 genomes]
rs3740092	1.00[EUR][1000 genomes]
rs3740093	1.00[EUR][1000 genomes]
rs41301601	0.91[EUR][1000 genomes]
rs41301609	0.97[EUR][1000 genomes]
rs41301611	0.97[EUR][1000 genomes]
rs41306544	0.91[EUR][1000 genomes]
rs41306546	0.91[EUR][1000 genomes]
rs59381196	0.88[EUR][1000 genomes]
rs73287558	1.00[ASN][1000 genomes]
rs74128187	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831848	chr10:45490176-45667670	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv971917	chr10:45547355-45595482	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45552000-45559600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:45554400-45558800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:45554600-45558800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:45555400-45558800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr10:45555600-45558800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr10:45557000-45558000	Enhancers	Fetal Brain Female	brain
7	chr10:45557200-45558000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr10:45557200-45558200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:45557200-45559000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:45557200-45559600	Enhancers	NHEK	skin
11	chr10:45557200-45560200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:45557200-45560800	Enhancers	HMEC	breast
13	chr10:45557400-45557800	Enhancers	Aorta	Aorta
14	chr10:45557400-45557800	Enhancers	Brain Anterior Caudate	brain
15	chr10:45557400-45558000	Enhancers	Placenta	Placenta
16	chr10:45557400-45558200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr10:45557600-45557800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr10:45557600-45557800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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