Variant report

Variant	rs11239315
Chromosome Location	chr10:45503571-45503572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:45495644..45497300-chr10:45502585..45504465,2	MCF-7	breast:
2	chr10:45501761..45504279-chr10:45755487..45758024,2	K562	blood:
3	chr10:45470718..45473140-chr10:45500575..45504463,3	K562	blood:

Variant related genes	Relation type
ENSG00000165512	Chromatin interaction
ENSG00000165511	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11239303	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11239305	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11239307	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11239308	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11239309	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11239311	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11239342	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11239343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11239345	1.00[EUR][1000 genomes]
rs11239346	1.00[EUR][1000 genomes]
rs12354652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12358699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12359377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12359697	0.91[EUR][1000 genomes]
rs17157322	0.91[EUR][1000 genomes]
rs3740092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740093	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41301601	0.91[EUR][1000 genomes]
rs41301609	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41301611	0.97[EUR][1000 genomes]
rs41306544	0.91[EUR][1000 genomes]
rs41306546	0.91[EUR][1000 genomes]
rs59381196	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv831848	chr10:45490176-45667670	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45497000-45511000	Weak transcription	Gastric	stomach
2	chr10:45497200-45504000	Weak transcription	Esophagus	oesophagus
3	chr10:45497400-45503800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr10:45497400-45504000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:45497400-45504000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:45497600-45503800	Weak transcription	Brain Substantia Nigra	brain
7	chr10:45497600-45504000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:45497800-45504000	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr10:45498200-45503800	Weak transcription	Colon Smooth Muscle	Colon
10	chr10:45498200-45503800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:45498200-45504000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:45498400-45503800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:45499400-45503800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr10:45499400-45504000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr10:45499400-45504000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr10:45499400-45504000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr10:45499400-45504000	Weak transcription	Fetal Stomach	stomach
18	chr10:45499400-45504000	Weak transcription	Ovary	ovary
19	chr10:45499400-45504000	Weak transcription	Psoas Muscle	Psoas
20	chr10:45499400-45504000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr10:45499400-45504000	Weak transcription	Spleen	Spleen
22	chr10:45499400-45511000	Weak transcription	Pancreas	Pancrea
23	chr10:45499600-45504000	Weak transcription	Fetal Intestine Small	intestine
24	chr10:45499600-45504000	Weak transcription	HSMMtube	muscle
25	chr10:45499800-45503800	Weak transcription	NHDF-Ad	bronchial
26	chr10:45499800-45504000	Weak transcription	Placenta	Placenta
27	chr10:45500000-45503600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr10:45500200-45503800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr10:45500400-45504000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr10:45500400-45510400	Weak transcription	Primary hematopoietic stem cells	blood
31	chr10:45500600-45503800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr10:45500600-45503800	Weak transcription	Brain Hippocampus Middle	brain
33	chr10:45500600-45503800	Weak transcription	HUVEC	blood vessel
34	chr10:45500600-45503800	Weak transcription	Osteobl	bone
35	chr10:45500600-45504000	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr10:45500600-45504000	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr10:45500600-45504000	Weak transcription	Primary T cells from cord blood	blood
38	chr10:45500600-45504000	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr10:45500600-45504000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr10:45500600-45504000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr10:45500600-45504000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr10:45500600-45504000	Weak transcription	K562	blood
43	chr10:45500600-45504000	Weak transcription	NH-A	brain
44	chr10:45500600-45504000	Weak transcription	NHLF	lung
45	chr10:45500800-45503800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr10:45500800-45503800	Weak transcription	Fetal Kidney	kidney
47	chr10:45500800-45504000	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr10:45501000-45503600	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr10:45501000-45503800	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr10:45501000-45504000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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