Variant report

Variant	rs17157322
Chromosome Location	chr10:45482162-45482163
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45479279..45482173-chr10:45482944..45485602,3	K562	blood:
2	chr10:45430664..45432254-chr10:45480745..45483576,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107551	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11239303	1.00[EUR][1000 genomes]
rs11239305	1.00[EUR][1000 genomes]
rs11239307	0.97[EUR][1000 genomes]
rs11239308	0.97[EUR][1000 genomes]
rs11239309	0.94[EUR][1000 genomes]
rs11239311	0.91[EUR][1000 genomes]
rs11239315	0.91[EUR][1000 genomes]
rs11239319	0.91[EUR][1000 genomes]
rs11239323	0.91[EUR][1000 genomes]
rs11239324	0.91[EUR][1000 genomes]
rs11239342	0.91[EUR][1000 genomes]
rs11239343	0.91[EUR][1000 genomes]
rs11239345	0.91[EUR][1000 genomes]
rs11239346	0.91[EUR][1000 genomes]
rs12354652	0.91[EUR][1000 genomes]
rs12358699	0.91[EUR][1000 genomes]
rs12359377	0.91[EUR][1000 genomes]
rs12359697	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3740092	0.91[EUR][1000 genomes]
rs3740093	0.91[EUR][1000 genomes]
rs41301599	0.97[ASN][1000 genomes]
rs41301601	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41301609	0.94[EUR][1000 genomes]
rs41301611	0.94[EUR][1000 genomes]
rs41306544	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41306546	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59381196	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv526734	chr10:45458485-45492054	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45474400-45484000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:45474400-45490800	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr10:45474400-45490800	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr10:45474600-45483000	Enhancers	Ovary	ovary
5	chr10:45474800-45482400	Enhancers	Fetal Heart	heart
6	chr10:45474800-45490200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr10:45475000-45485000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:45476200-45484600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:45476600-45483800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:45476800-45484600	Weak transcription	Fetal Thymus	thymus
11	chr10:45476800-45487400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:45476800-45491400	Weak transcription	Fetal Kidney	kidney
13	chr10:45477200-45482600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:45477400-45487400	Weak transcription	Fetal Intestine Large	intestine
15	chr10:45477800-45488200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr10:45477800-45489400	Strong transcription	Duodenum Mucosa	Duodenum
17	chr10:45478000-45482200	Strong transcription	Brain Substantia Nigra	brain
18	chr10:45478000-45482200	Genic enhancers	Stomach Smooth Muscle	stomach
19	chr10:45478000-45486400	Weak transcription	Colonic Mucosa	Colon
20	chr10:45478200-45487600	Weak transcription	Psoas Muscle	Psoas
21	chr10:45478400-45486600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr10:45478400-45489000	Weak transcription	NHDF-Ad	bronchial
23	chr10:45478800-45489200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr10:45478800-45495800	Weak transcription	HMEC	breast
25	chr10:45479000-45482200	Strong transcription	Fetal Brain Female	brain
26	chr10:45479600-45482200	Strong transcription	GM12878-XiMat	blood
27	chr10:45479800-45485800	Strong transcription	Brain Inferior Temporal Lobe	brain
28	chr10:45480200-45482200	Enhancers	Fetal Lung	lung
29	chr10:45480400-45482200	Enhancers	NH-A	brain
30	chr10:45480400-45482600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:45480400-45482800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:45480400-45483000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:45480600-45482400	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr10:45480600-45482400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
35	chr10:45480600-45483000	Genic enhancers	Adipose Nuclei	Adipose
36	chr10:45480600-45484000	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr10:45480600-45485200	Strong transcription	HSMM	muscle
38	chr10:45480800-45482200	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr10:45480800-45482200	Strong transcription	Brain Cingulate Gyrus	brain
40	chr10:45480800-45482400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr10:45480800-45482400	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr10:45480800-45482400	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr10:45480800-45482600	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr10:45480800-45482800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr10:45480800-45484800	Weak transcription	Liver	Liver
46	chr10:45480800-45487400	Weak transcription	Gastric	stomach
47	chr10:45480800-45489400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr10:45481000-45482200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr10:45481000-45482200	Genic enhancers	Brain Anterior Caudate	brain
50	chr10:45481000-45482400	Enhancers	HUES48 Cell Line	embryonic stem cell

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