The 2.0 version of rSNPBase

Variant report

Variant rs11239311
Chromosome Location chr10:45500828-45500829
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:108 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:45497000-45511000 Weak transcription Gastric stomach
2 chr10:45497200-45504000 Weak transcription Esophagus oesophagus
3 chr10:45497400-45501200 Weak transcription Aorta Aorta
4 chr10:45497400-45501400 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr10:45497400-45503800 Weak transcription Brain Cingulate Gyrus brain
6 chr10:45497400-45504000 Weak transcription H9 Cell Line embryonic stem cell
7 chr10:45497400-45504000 Weak transcription Placenta Amnion Placenta Amnion
8 chr10:45497600-45502800 Weak transcription Fetal Brain Male brain
9 chr10:45497600-45503800 Weak transcription Brain Substantia Nigra brain
10 chr10:45497600-45504000 Weak transcription Brain Inferior Temporal Lobe brain
11 chr10:45497800-45502200 Weak transcription Right Ventricle heart
12 chr10:45497800-45504000 Weak transcription Primary neutrophils fromperipheralblood blood
13 chr10:45498200-45503800 Weak transcription Colon Smooth Muscle Colon
14 chr10:45498200-45503800 Weak transcription Skeletal Muscle Male skeletal muscle
15 chr10:45498200-45504000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
16 chr10:45498400-45501200 Strong transcription HUES64 Cell Line embryonic stem cell
17 chr10:45498400-45503800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
18 chr10:45498600-45501400 Strong transcription Fetal Lung lung
19 chr10:45498800-45501200 Strong transcription iPS-20b Cell Line embryonic stem cell
20 chr10:45498800-45501200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr10:45498800-45501200 Strong transcription Primary T cells fromperipheralblood blood
22 chr10:45498800-45501200 Strong transcription Rectal Mucosa Donor 29 rectum
23 chr10:45498800-45501600 Strong transcription Stomach Smooth Muscle stomach
24 chr10:45499000-45501000 Strong transcription Cortex derived primary cultured neurospheres brain
25 chr10:45499000-45501200 Strong transcription Duodenum Mucosa Duodenum
26 chr10:45499000-45501400 Strong transcription Brain Germinal Matrix brain
27 chr10:45499200-45501000 Enhancers Small Intestine intestine
28 chr10:45499200-45501400 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
29 chr10:45499200-45502800 Enhancers HepG2 liver
30 chr10:45499400-45501000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
31 chr10:45499400-45501200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
32 chr10:45499400-45501200 Strong transcription Fetal Intestine Large intestine
33 chr10:45499400-45501400 Strong transcription Fetal Brain Female brain
34 chr10:45499400-45501400 Strong transcription HSMM muscle
35 chr10:45499400-45502200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr10:45499400-45502400 Strong transcription Thymus Thymus
37 chr10:45499400-45502600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr10:45499400-45503800 Weak transcription Muscle Satellite Cultured Cells --
39 chr10:45499400-45504000 Weak transcription Primary T helper naive cells from peripheral blood blood
40 chr10:45499400-45504000 Weak transcription Primary T killer memory cells from peripheral blood blood
41 chr10:45499400-45504000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
42 chr10:45499400-45504000 Weak transcription Fetal Stomach stomach
43 chr10:45499400-45504000 Weak transcription Ovary ovary
44 chr10:45499400-45504000 Weak transcription Psoas Muscle Psoas
45 chr10:45499400-45504000 Weak transcription Sigmoid Colon Sigmoid Colon
46 chr10:45499400-45504000 Weak transcription Spleen Spleen
47 chr10:45499400-45511000 Weak transcription Pancreas Pancrea
48 chr10:45499600-45501000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
49 chr10:45499600-45501200 Enhancers Liver Liver
50 chr10:45499600-45501400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015