Variant report

Variant	rs12261280
Chromosome Location	chr10:61544075-61544076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12249686	1.00[EUR][1000 genomes]
rs12249754	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12257401	1.00[EUR][1000 genomes]
rs12264364	1.00[EUR][1000 genomes]
rs12264374	1.00[EUR][1000 genomes]
rs12264432	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16914038	1.00[EUR][1000 genomes]
rs16914371	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2090120	1.00[EUR][1000 genomes]
rs2393568	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28406036	1.00[EUR][1000 genomes]
rs2893810	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2893811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4275570	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7073222	1.00[EUR][1000 genomes]
rs7077386	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7475333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7898886	1.00[EUR][1000 genomes]
rs7915582	1.00[EUR][1000 genomes]
rs7917618	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3438914	chr10:61542246-61547444	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61540000-61548600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:61540000-61551600	Weak transcription	Fetal Lung	lung
4	chr10:61540200-61546800	Weak transcription	Ovary	ovary
5	chr10:61540200-61549600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:61540200-61550200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:61540200-61550400	Weak transcription	NH-A	brain
8	chr10:61540200-61551600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr10:61540200-61551600	Weak transcription	Brain Anterior Caudate	brain
10	chr10:61540200-61551600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr10:61540200-61551800	Weak transcription	Brain Germinal Matrix	brain
12	chr10:61540200-61551800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:61540200-61552200	Weak transcription	Fetal Stomach	stomach
14	chr10:61540200-61562800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:61540800-61548800	Weak transcription	Psoas Muscle	Psoas
16	chr10:61540800-61548800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:61540800-61551600	Weak transcription	HSMM	muscle
18	chr10:61541000-61550400	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:61541400-61551400	Weak transcription	Hela-S3	cervix
20	chr10:61541400-61551400	Weak transcription	HSMMtube	muscle
21	chr10:61542200-61549600	Weak transcription	Brain Substantia Nigra	brain
22	chr10:61544000-61547400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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