Variant report

Variant	rs7898886
Chromosome Location	chr10:61494564-61494565
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12249686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12249754	1.00[EUR][1000 genomes]
rs12257401	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12261280	1.00[EUR][1000 genomes]
rs12264364	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12264374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12264432	1.00[EUR][1000 genomes]
rs16914038	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16914371	1.00[EUR][1000 genomes]
rs2090120	1.00[EUR][1000 genomes]
rs2393568	1.00[EUR][1000 genomes]
rs28406036	1.00[EUR][1000 genomes]
rs2893810	1.00[EUR][1000 genomes]
rs2893811	1.00[EUR][1000 genomes]
rs4275570	1.00[EUR][1000 genomes]
rs7073222	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7077386	1.00[EUR][1000 genomes]
rs7096120	1.00[AMR][1000 genomes]
rs7475333	1.00[EUR][1000 genomes]
rs7915582	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7917618	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347621	chr10:61490062-61527578	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3427654	chr10:61491530-61526282	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61487200-61494800	Weak transcription	Stomach Mucosa	stomach
2	chr10:61494000-61494800	Enhancers	Skeletal Muscle Female	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links