Variant report

Variant	rs12262563
Chromosome Location	chr10:18658168-18658169
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11013890	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11013933	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11013950	0.85[EUR][1000 genomes]
rs12254796	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1325992	0.91[ASN][1000 genomes]
rs4747344	0.83[EUR][1000 genomes]
rs4748453	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs57494713	0.97[ASN][1000 genomes]
rs61418170	0.81[ASN][1000 genomes]
rs7908976	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18639600-18661400	Weak transcription	Aorta	Aorta
2	chr10:18652400-18667400	Weak transcription	Left Ventricle	heart
3	chr10:18655000-18658600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:18656600-18658400	Enhancers	NHDF-Ad	bronchial
5	chr10:18656800-18658400	Enhancers	NHLF	lung
6	chr10:18657800-18658200	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr10:18657800-18659000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr10:18658000-18664800	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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