Variant report

Variant	rs4748453
Chromosome Location	chr10:18646986-18646987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10458703	0.89[CHB][hapmap]
rs10828533	0.85[CHB][hapmap]
rs11013862	0.85[CHB][hapmap]
rs11013890	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11013933	0.89[CHB][hapmap];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12254796	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12262563	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1325992	0.94[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs16917194	0.89[MKK][hapmap];0.85[YRI][hapmap]
rs4747344	0.83[CHD][hapmap];0.85[JPT][hapmap]
rs57494713	0.84[ASN][1000 genomes]
rs61418170	0.96[ASN][1000 genomes]
rs6482360	0.80[CHB][hapmap]
rs7896075	0.85[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap]
rs7901640	0.80[CHB][hapmap]
rs7904974	0.84[CHB][hapmap]
rs7908976	0.80[JPT][hapmap]
rs7920123	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4748453	NSUN6	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18639600-18652200	Weak transcription	Right Atrium	heart
2	chr10:18639600-18661400	Weak transcription	Aorta	Aorta
3	chr10:18639800-18650600	Weak transcription	Pancreas	Pancrea
4	chr10:18639800-18651600	Weak transcription	Ovary	ovary
5	chr10:18640400-18647600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:18643600-18647000	Weak transcription	Left Ventricle	heart
7	chr10:18646800-18650000	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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