Variant report

Variant	rs11013933
Chromosome Location	chr10:18668503-18668504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11013890	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11013950	0.91[CEU][hapmap];0.81[CHB][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12254796	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12262563	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1325992	0.95[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs4747344	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs4748453	0.89[CHB][hapmap];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4748457	0.93[YRI][hapmap]
rs57494713	0.97[ASN][1000 genomes]
rs6482360	0.81[CHB][hapmap]
rs7896075	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs7908976	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs7919691	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18659400-18676000	Weak transcription	Right Ventricle	heart
2	chr10:18665200-18680400	Weak transcription	Fetal Stomach	stomach
3	chr10:18666400-18682400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:18667000-18669600	Weak transcription	Fetal Heart	heart
5	chr10:18667400-18669000	Enhancers	Left Ventricle	heart
6	chr10:18667800-18672200	Weak transcription	Ovary	ovary
7	chr10:18668000-18669400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:18668200-18668800	Enhancers	Right Atrium	heart
9	chr10:18668400-18684000	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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