Variant report

Variant	rs7904974
Chromosome Location	chr10:18654811-18654812
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10734050	0.81[EUR][1000 genomes]
rs10734051	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs10741040	1.00[CEU][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10764443	1.00[CEU][hapmap];0.89[YRI][hapmap];0.92[EUR][1000 genomes]
rs10764447	0.84[CEU][hapmap]
rs10828533	0.89[CHB][hapmap]
rs10828592	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10828605	0.81[EUR][1000 genomes]
rs10828606	0.81[EUR][1000 genomes]
rs10828607	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10828616	0.85[CEU][hapmap]
rs11013859	1.00[CEU][hapmap];0.82[YRI][hapmap];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11013862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013865	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs11013889	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12356676	0.82[CEU][hapmap];0.80[CHB][hapmap]
rs12572782	1.00[CEU][hapmap];0.80[YRI][hapmap];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1277843	0.82[ASN][1000 genomes]
rs1325991	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs16917217	1.00[CEU][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1750479	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs17539088	1.00[CEU][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1926028	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4748453	0.84[CHB][hapmap]
rs61839222	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6482360	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7072365	0.81[EUR][1000 genomes]
rs7099729	0.81[CEU][hapmap]
rs7898684	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7901640	0.95[CHB][hapmap];0.85[JPT][hapmap];0.81[YRI][hapmap];0.94[ASN][1000 genomes]
rs7907743	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7908718	0.81[CEU][hapmap]
rs7911542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7919691	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7920123	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18639600-18661400	Weak transcription	Aorta	Aorta
2	chr10:18652400-18667400	Weak transcription	Left Ventricle	heart
3	chr10:18654800-18655000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:18654800-18656800	Weak transcription	Fetal Heart	heart

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