Variant report

Variant	rs10828607
Chromosome Location	chr10:18665726-18665727
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10734050	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10734051	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10741040	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10741042	0.93[ASN][1000 genomes]
rs10764443	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10764447	0.93[ASN][1000 genomes]
rs10828592	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10828605	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828606	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828616	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10828617	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11013859	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11013862	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11013865	0.92[ASN][1000 genomes]
rs11013889	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12572782	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1325991	0.98[AFR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16917217	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1750479	0.84[EUR][1000 genomes]
rs17539088	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1926028	0.98[AFR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61839222	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61839226	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6482360	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7072365	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7085825	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7099729	0.98[ASN][1000 genomes]
rs7894616	0.88[ASN][1000 genomes]
rs7898684	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7901058	0.94[ASN][1000 genomes]
rs7901640	0.81[ASN][1000 genomes]
rs7904974	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7907743	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7908718	0.91[ASN][1000 genomes]
rs7911051	0.92[ASN][1000 genomes]
rs7911542	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7919691	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7920123	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18652400-18667400	Weak transcription	Left Ventricle	heart
2	chr10:18659400-18676000	Weak transcription	Right Ventricle	heart
3	chr10:18662000-18667400	Weak transcription	Aorta	Aorta
4	chr10:18665200-18666400	Enhancers	Fetal Heart	heart
5	chr10:18665200-18680400	Weak transcription	Fetal Stomach	stomach
6	chr10:18665400-18665800	Enhancers	Liver	Liver
7	chr10:18665600-18665800	Enhancers	Right Atrium	heart

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