Variant report

Variant	rs7908718
Chromosome Location	chr10:18668475-18668476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10734050	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10734051	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10741040	0.81[CEU][hapmap];0.85[CHB][hapmap];0.86[ASN][1000 genomes]
rs10741042	0.94[AFR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10764443	0.82[CEU][hapmap];0.91[JPT][hapmap]
rs10764447	1.00[CEU][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10828605	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10828606	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10828607	0.91[ASN][1000 genomes]
rs10828616	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10828617	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11013859	0.82[CEU][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs11013862	0.81[CEU][hapmap]
rs11013865	0.94[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11013889	0.91[ASN][1000 genomes]
rs12356676	0.82[CHB][hapmap]
rs12572782	0.81[CEU][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1325991	0.86[ASN][1000 genomes]
rs16917217	0.81[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs17539088	0.81[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs1926028	0.86[ASN][1000 genomes]
rs61839222	0.86[ASN][1000 genomes]
rs61839226	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6482360	0.82[CEU][hapmap]
rs7072365	0.99[AFR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7085825	0.99[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7099729	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7894616	0.81[ASN][1000 genomes]
rs7898684	0.81[ASN][1000 genomes]
rs7901058	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7904974	0.81[CEU][hapmap]
rs7907743	0.83[ASN][1000 genomes]
rs7910898	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7911051	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7920123	0.94[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18659400-18676000	Weak transcription	Right Ventricle	heart
2	chr10:18665200-18680400	Weak transcription	Fetal Stomach	stomach
3	chr10:18666400-18682400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:18667000-18669600	Weak transcription	Fetal Heart	heart
5	chr10:18667400-18669000	Enhancers	Left Ventricle	heart
6	chr10:18667800-18672200	Weak transcription	Ovary	ovary
7	chr10:18668000-18669400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:18668200-18668800	Enhancers	Right Atrium	heart
9	chr10:18668400-18684000	Weak transcription	Stomach Smooth Muscle	stomach

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