Variant report

Variant	rs12356676
Chromosome Location	chr10:18647504-18647505
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10734051	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs10741040	0.82[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs10741042	0.83[ASN][1000 genomes]
rs10764443	0.82[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs10764447	0.83[ASN][1000 genomes]
rs10828616	0.90[CHB][hapmap];0.88[CHD][hapmap];0.83[GIH][hapmap]
rs11013859	0.82[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs11013862	0.82[CEU][hapmap];0.81[CHB][hapmap]
rs11013865	1.00[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs11013889	0.81[ASN][1000 genomes]
rs12572782	0.82[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.93[TSI][hapmap];0.84[ASN][1000 genomes]
rs1325991	0.83[ASN][1000 genomes]
rs16917217	0.82[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];0.85[TSI][hapmap];0.86[ASN][1000 genomes]
rs1750479	0.95[CEU][hapmap]
rs17539088	0.82[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];0.85[TSI][hapmap];0.86[ASN][1000 genomes]
rs1926028	0.83[ASN][1000 genomes]
rs61839222	0.86[ASN][1000 genomes]
rs6482360	0.82[CEU][hapmap]
rs7099729	0.90[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];0.81[ASN][1000 genomes]
rs7898684	0.81[ASN][1000 genomes]
rs7901058	0.84[ASN][1000 genomes]
rs7901640	0.84[CHD][hapmap]
rs7904974	0.82[CEU][hapmap];0.80[CHB][hapmap]
rs7907743	0.83[ASN][1000 genomes]
rs7908718	0.82[CHB][hapmap]
rs7911051	0.82[ASN][1000 genomes]
rs7920123	0.80[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18639600-18652200	Weak transcription	Right Atrium	heart
2	chr10:18639600-18661400	Weak transcription	Aorta	Aorta
3	chr10:18639800-18650600	Weak transcription	Pancreas	Pancrea
4	chr10:18639800-18651600	Weak transcription	Ovary	ovary
5	chr10:18640400-18647600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:18646800-18650000	Enhancers	Fetal Heart	heart
7	chr10:18647400-18647800	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr10:18647400-18651600	Weak transcription	Left Ventricle	heart

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