Variant report

Variant	rs10828616
Chromosome Location	chr10:18670017-18670018
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10734050	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10734051	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10741040	0.85[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10741042	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10764443	0.85[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs10764447	0.94[CEU][hapmap];0.93[YRI][hapmap];0.99[AFR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10828605	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10828606	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10828607	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10828617	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013859	0.85[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs11013862	0.85[CEU][hapmap]
rs11013865	1.00[ASW][hapmap];0.89[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.91[LWK][hapmap];0.96[MKK][hapmap];0.94[TSI][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11013889	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11013950	0.86[CHB][hapmap]
rs12356676	0.90[CHB][hapmap];0.88[CHD][hapmap];0.83[GIH][hapmap]
rs12572782	0.92[ASW][hapmap];0.85[CEU][hapmap];0.85[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.81[MKK][hapmap];0.88[ASN][1000 genomes]
rs1325991	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16917217	0.92[ASW][hapmap];0.85[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap];0.80[MKK][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17539088	0.92[ASW][hapmap];0.85[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1926028	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4747344	0.82[CHB][hapmap]
rs61839222	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61839226	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6482360	0.85[CEU][hapmap]
rs7072365	0.99[AFR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7085825	0.99[AFR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7099729	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7894616	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7898684	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7901058	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7901640	0.87[CHD][hapmap]
rs7904974	0.85[CEU][hapmap]
rs7907743	0.89[ASN][1000 genomes]
rs7908718	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7908976	0.81[CHB][hapmap]
rs7910898	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7911051	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7920123	0.83[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18659400-18676000	Weak transcription	Right Ventricle	heart
2	chr10:18665200-18680400	Weak transcription	Fetal Stomach	stomach
3	chr10:18666400-18682400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:18667800-18672200	Weak transcription	Ovary	ovary
5	chr10:18668400-18684000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:18669000-18689400	Weak transcription	Left Ventricle	heart
7	chr10:18669600-18670200	Enhancers	Fetal Heart	heart

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