Variant report

Variant	rs12266359
Chromosome Location	chr10:50074767-50074768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10857636	1.00[ASW][hapmap]
rs12263411	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2663040	0.98[EUR][1000 genomes]
rs41283279	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41283281	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41283283	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56367434	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72797180	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72797185	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50054400-50081600	Weak transcription	Spleen	Spleen
2	chr10:50060200-50075600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:50060600-50075400	Weak transcription	Primary T cells from cord blood	blood
4	chr10:50065000-50075400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr10:50068600-50075200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:50071200-50075200	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr10:50072200-50074800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:50072200-50087800	Weak transcription	Gastric	stomach
9	chr10:50072600-50074800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:50072800-50126200	Strong transcription	Primary B cells from peripheral blood	blood
11	chr10:50074200-50107000	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr10:50074400-50078200	Strong transcription	GM12878-XiMat	blood
13	chr10:50074600-50093200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr10:50074600-50129600	Strong transcription	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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