Variant report

Variant	rs72797185
Chromosome Location	chr10:50065459-50065460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12263411	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12266359	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2663040	0.95[EUR][1000 genomes]
rs41283279	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs41283281	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs41283283	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56367434	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72797180	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50028600-50070200	Strong transcription	Primary B cells from peripheral blood	blood
2	chr10:50054400-50081600	Weak transcription	Spleen	Spleen
3	chr10:50060200-50075600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:50060600-50075400	Weak transcription	Primary T cells from cord blood	blood
5	chr10:50061200-50068400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:50062000-50068000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:50062200-50068400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:50062800-50068000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr10:50063000-50066000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr10:50063000-50069200	Weak transcription	GM12878-XiMat	blood
11	chr10:50064600-50069200	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr10:50064600-50070000	Strong transcription	Primary B cells from cord blood	blood
13	chr10:50065000-50075400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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