Variant report

Variant	rs41283279
Chromosome Location	chr10:50028308-50028309
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:50027757-50029437	GM12878	blood:	n/a	n/a
2	POLR2A	chr10:50027747-50030569	GM12891	blood:	n/a	n/a
3	POLR2A	chr10:50028109-50029472	GM12892	blood:	n/a	n/a
4	POLR2A	chr10:50028072-50028423	GM12892	blood:	n/a	n/a
5	POLR2A	chr10:50028040-50029369	GM19193	blood:	n/a	n/a

Variant related genes	Relation type
WDFY4	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12263411	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12266359	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2663040	0.92[EUR][1000 genomes]
rs41283281	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs41283283	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56367434	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72797180	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72797185	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50013600-50061000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:50014200-50030000	Weak transcription	Right Atrium	heart
3	chr10:50015200-50063400	Strong transcription	Primary B cells from cord blood	blood
4	chr10:50015600-50029800	Weak transcription	Gastric	stomach
5	chr10:50016200-50063000	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr10:50016200-50063000	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr10:50016600-50062400	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr10:50019400-50029000	Weak transcription	Primary T cells from cord blood	blood
9	chr10:50020000-50052000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:50022600-50040400	Weak transcription	Lung	lung
11	chr10:50023400-50029200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:50025000-50062800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr10:50025200-50028600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:50025200-50028600	Strong transcription	Spleen	Spleen
15	chr10:50025200-50032000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr10:50025400-50029800	Weak transcription	Esophagus	oesophagus
17	chr10:50026000-50048200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:50026600-50029400	Weak transcription	GM12878-XiMat	blood
19	chr10:50026800-50028400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:50027800-50030200	Enhancers	Fetal Thymus	thymus
21	chr10:50028000-50028400	Enhancers	Brain Germinal Matrix	brain
22	chr10:50028200-50028600	Genic enhancers	Primary B cells from peripheral blood	blood
23	chr10:50028200-50029200	Weak transcription	Primary hematopoietic stem cells	blood

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