Variant report

Variant	rs12266888
Chromosome Location	chr10:55119042-55119043
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10508994	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508995	0.84[EUR][1000 genomes]
rs10825004	0.83[ASN][1000 genomes]
rs11003591	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11003592	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11003593	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12251771	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12259462	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12265718	0.94[ASN][1000 genomes]
rs12266915	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12412145	0.84[EUR][1000 genomes]
rs12414765	0.84[EUR][1000 genomes]
rs12415081	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12416448	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12570447	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12571480	0.84[EUR][1000 genomes]
rs12571715	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12572525	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1909403	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1909413	0.83[EUR][1000 genomes]
rs1909414	0.83[EUR][1000 genomes]
rs1909415	0.83[EUR][1000 genomes]
rs1909416	0.83[EUR][1000 genomes]
rs1909426	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1909427	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2133469	0.84[EUR][1000 genomes]
rs2133470	0.84[EUR][1000 genomes]
rs2173518	0.84[EUR][1000 genomes]
rs2173519	0.84[EUR][1000 genomes]
rs2384239	0.84[EUR][1000 genomes]
rs2384240	0.84[EUR][1000 genomes]
rs2384241	0.84[EUR][1000 genomes]
rs28891704	0.84[EUR][1000 genomes]
rs4307632	0.84[EUR][1000 genomes]
rs4468253	0.83[EUR][1000 genomes]
rs4935426	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4935430	0.84[EUR][1000 genomes]
rs4935433	0.84[EUR][1000 genomes]
rs5004996	0.84[EUR][1000 genomes]
rs60091591	0.84[EUR][1000 genomes]
rs60730935	0.80[EUR][1000 genomes]
rs61284846	0.80[EUR][1000 genomes]
rs7076625	0.84[EUR][1000 genomes]
rs7100563	0.91[ASN][1000 genomes]
rs74134534	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs74134539	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74134540	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74134554	0.84[EUR][1000 genomes]
rs74134556	0.83[EUR][1000 genomes]
rs74134558	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1041908	chr10:55003164-55283251	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv540629	chr10:55003164-55283251	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1040943	chr10:55040577-55279797	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv540630	chr10:55040577-55279797	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1049320	chr10:55102814-55138027	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1037480	chr10:55102814-55289571	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv2757385	chr10:55108129-55137361	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2759752	chr10:55108129-55137361	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3504729	chr10:55117683-55140591	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3504840	chr10:55117689-55140609	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3504618	chr10:55117750-55140559	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3504951	chr10:55117750-55140559	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3693055	chr10:55118404-55137321	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv516878	chr10:55118404-55137321	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv8664	chr10:55118472-55141090	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv1035509	chr10:55119013-55137245	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1053732	chr10:55119013-55137321	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv1051435	chr10:55119013-55137445	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv1047156	chr10:55119013-55138027	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv1038412	chr10:55119013-55142163	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv2762867	chr10:55119025-55138039	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55117000-55119400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr10:55117200-55119400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr10:55117200-55119400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr10:55117200-55119600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr10:55117400-55119400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:55117400-55119600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr10:55117600-55119200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr10:55117600-55130000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:55118600-55119800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr10:55118600-55124600	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links