Variant report

Variant	rs74134539
Chromosome Location	chr10:55117456-55117457
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10508994	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508995	0.84[EUR][1000 genomes]
rs10825004	0.83[ASN][1000 genomes]
rs11003591	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11003592	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11003593	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12251771	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12259462	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12265718	0.94[ASN][1000 genomes]
rs12266888	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266915	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12412145	0.84[EUR][1000 genomes]
rs12414765	0.84[EUR][1000 genomes]
rs12415081	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12416448	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12570447	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12571480	0.84[EUR][1000 genomes]
rs12571715	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12572525	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1909403	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1909413	0.83[EUR][1000 genomes]
rs1909414	0.83[EUR][1000 genomes]
rs1909415	0.83[EUR][1000 genomes]
rs1909416	0.83[EUR][1000 genomes]
rs1909426	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1909427	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2133469	0.84[EUR][1000 genomes]
rs2133470	0.84[EUR][1000 genomes]
rs2173518	0.84[EUR][1000 genomes]
rs2173519	0.84[EUR][1000 genomes]
rs2384239	0.84[EUR][1000 genomes]
rs2384240	0.84[EUR][1000 genomes]
rs2384241	0.84[EUR][1000 genomes]
rs28891704	0.84[EUR][1000 genomes]
rs4307632	0.84[EUR][1000 genomes]
rs4468253	0.83[EUR][1000 genomes]
rs4935426	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4935430	0.84[EUR][1000 genomes]
rs4935433	0.84[EUR][1000 genomes]
rs5004996	0.84[EUR][1000 genomes]
rs60091591	0.84[EUR][1000 genomes]
rs60730935	0.80[EUR][1000 genomes]
rs61284846	0.80[EUR][1000 genomes]
rs7076625	0.84[EUR][1000 genomes]
rs7100563	0.91[ASN][1000 genomes]
rs74134534	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs74134540	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74134554	0.84[EUR][1000 genomes]
rs74134556	0.83[EUR][1000 genomes]
rs74134558	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1041908	chr10:55003164-55283251	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv540629	chr10:55003164-55283251	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1040943	chr10:55040577-55279797	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv540630	chr10:55040577-55279797	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1049320	chr10:55102814-55138027	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1037480	chr10:55102814-55289571	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv2757385	chr10:55108129-55137361	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2759752	chr10:55108129-55137361	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55116000-55118400	Enhancers	HMEC	breast
2	chr10:55116400-55118000	Enhancers	NHEK	skin
3	chr10:55116400-55118600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:55116800-55117800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:55116800-55117800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:55116800-55118000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr10:55116800-55118200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:55117000-55119400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr10:55117200-55117800	Enhancers	Fetal Heart	heart
10	chr10:55117200-55118400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:55117200-55119400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr10:55117200-55119400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr10:55117200-55119600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr10:55117400-55117600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:55117400-55118200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:55117400-55118600	Enhancers	H1 Cell Line	embryonic stem cell
17	chr10:55117400-55118600	Enhancers	H9 Cell Line	embryonic stem cell
18	chr10:55117400-55118600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:55117400-55119400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:55117400-55119600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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