Variant report

Variant	rs12570447
Chromosome Location	chr10:55116060-55116061
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10508994	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10825004	0.96[ASN][1000 genomes]
rs11003591	0.87[ASN][1000 genomes]
rs11003593	0.83[ASN][1000 genomes]
rs11003594	0.82[EUR][1000 genomes]
rs12251771	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12259462	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12265718	0.85[ASN][1000 genomes]
rs12266888	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12266915	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12415081	0.98[ASN][1000 genomes]
rs12416448	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12571715	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12572525	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1909403	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1909426	0.84[ASN][1000 genomes]
rs1909427	0.84[ASN][1000 genomes]
rs4935426	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7076625	0.81[ASN][1000 genomes]
rs7100563	0.85[ASN][1000 genomes]
rs74134534	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74134539	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs74134540	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74134545	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1041908	chr10:55003164-55283251	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv540629	chr10:55003164-55283251	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1040943	chr10:55040577-55279797	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv540630	chr10:55040577-55279797	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1049320	chr10:55102814-55138027	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1037480	chr10:55102814-55289571	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv2757385	chr10:55108129-55137361	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2759752	chr10:55108129-55137361	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55104400-55117400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr10:55116000-55116200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr10:55116000-55116400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:55116000-55117400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:55116000-55118400	Enhancers	HMEC	breast

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