Variant report
| Variant | rs12268401 |
|---|---|
| Chromosome Location | chr10:55897348-55897349 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11004091 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11004092 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11004093 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11004109 | 0.92[AFR][1000 genomes] |
| rs11004115 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11497832 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12248502 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12250464 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12254026 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12256914 | 0.87[AFR][1000 genomes] |
| rs12258568 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12261390 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12263499 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12265459 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12269047 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73239985 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73241712 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73241714 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73241716 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73241718 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv8667 | chr10:55803106-56022647 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv428557 | chr10:55815334-55988225 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv870252 | chr10:55823123-56029435 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv948730 | chr10:55845301-56093271 | ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv1035173 | chr10:55847066-56005288 | Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv467214 | chr10:55881720-55948714 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | nsv430232 | chr10:55883194-56027294 | Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:55897200-55898400 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
