Variant report

Variant	rs12269047
Chromosome Location	chr10:55890529-55890530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	10:55597627-55602376..10:55882057-55892580	GM12878	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10437400	1.00[YRI][hapmap]
rs11004091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11004092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11004093	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11004109	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs11004112	1.00[YRI][hapmap]
rs11004115	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11497832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243886	1.00[YRI][hapmap]
rs12245040	1.00[YRI][hapmap]
rs12245176	0.92[YRI][hapmap]
rs12245299	1.00[YRI][hapmap]
rs12245360	1.00[YRI][hapmap]
rs12245655	1.00[YRI][hapmap]
rs12248502	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12248588	1.00[YRI][hapmap]
rs12249403	1.00[YRI][hapmap]
rs12250179	1.00[YRI][hapmap]
rs12250464	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12254026	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12254547	1.00[YRI][hapmap]
rs12255000	1.00[YRI][hapmap]
rs12255063	1.00[YRI][hapmap]
rs12255589	1.00[YRI][hapmap]
rs12256914	0.87[AFR][1000 genomes]
rs12257647	1.00[YRI][hapmap]
rs12258568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12261101	0.83[YRI][hapmap]
rs12261390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12263499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12265459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12265702	1.00[YRI][hapmap]
rs12265890	1.00[YRI][hapmap]
rs12266947	0.92[YRI][hapmap]
rs12267014	1.00[YRI][hapmap]
rs12268401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12268555	1.00[YRI][hapmap]
rs73239985	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9651344	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv8667	chr10:55803106-56022647	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv428557	chr10:55815334-55988225	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv870252	chr10:55823123-56029435	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1035173	chr10:55847066-56005288	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv467214	chr10:55881720-55948714	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv430232	chr10:55883194-56027294	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55890200-55890600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr10:55890200-55890600	Enhancers	Placenta Amnion	Placenta Amnion

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