Variant report
| Variant | rs12248588 |
|---|---|
| Chromosome Location | chr10:55907161-55907162 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:43)
| rs_ID | r2[population] |
|---|---|
| rs10437400 | 1.00[YRI][hapmap] |
| rs11004091 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11004092 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11004093 | 1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11004109 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes] |
| rs11004112 | 1.00[YRI][hapmap] |
| rs11004115 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11497832 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12243886 | 1.00[YRI][hapmap] |
| rs12245040 | 1.00[YRI][hapmap] |
| rs12245176 | 0.92[YRI][hapmap] |
| rs12245299 | 1.00[YRI][hapmap] |
| rs12245360 | 1.00[YRI][hapmap] |
| rs12245655 | 1.00[YRI][hapmap] |
| rs12248502 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12249403 | 1.00[YRI][hapmap] |
| rs12250179 | 1.00[YRI][hapmap] |
| rs12250464 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12254026 | 1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12254547 | 1.00[YRI][hapmap] |
| rs12255000 | 1.00[YRI][hapmap] |
| rs12255063 | 1.00[YRI][hapmap] |
| rs12255589 | 1.00[YRI][hapmap] |
| rs12256914 | 0.82[AFR][1000 genomes] |
| rs12257647 | 1.00[YRI][hapmap] |
| rs12258568 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12261101 | 0.83[YRI][hapmap] |
| rs12261390 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12263499 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12265459 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12265702 | 1.00[YRI][hapmap] |
| rs12265890 | 1.00[YRI][hapmap] |
| rs12266947 | 0.92[YRI][hapmap] |
| rs12267014 | 1.00[YRI][hapmap] |
| rs12268401 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12268555 | 1.00[YRI][hapmap] |
| rs12269047 | 1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73239985 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73241712 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73241714 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73241716 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73241718 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9651344 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv8667 | chr10:55803106-56022647 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv428557 | chr10:55815334-55988225 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv870252 | chr10:55823123-56029435 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv948730 | chr10:55845301-56093271 | ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv1035173 | chr10:55847066-56005288 | Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv467214 | chr10:55881720-55948714 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | nsv430232 | chr10:55883194-56027294 | Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 8 | nsv895431 | chr10:55898144-55955444 | Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 9 | esv3352167 | chr10:55904546-55908244 | Inactive region | Chromatin interactive region | n/a | n/a | diseases |
| 10 | esv2829924 | chr10:55906112-56038831 | Weak transcription Enhancers Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
