Variant report

Variant	rs12263499
Chromosome Location	chr10:55900315-55900316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11004091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11004092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11004093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11004109	0.92[AFR][1000 genomes]
rs11004115	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11497832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12248502	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250464	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12254026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12256914	0.87[AFR][1000 genomes]
rs12258568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12261390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12265459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12268401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12269047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73239985	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8667	chr10:55803106-56022647	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv428557	chr10:55815334-55988225	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv870252	chr10:55823123-56029435	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1035173	chr10:55847066-56005288	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv467214	chr10:55881720-55948714	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv430232	chr10:55883194-56027294	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv895431	chr10:55898144-55955444	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55900200-55900400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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