Variant report

Variant	rs12245655
Chromosome Location	chr10:55908254-55908255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:55908092..55910671-chr10:55913950..55916622,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10437400	1.00[YRI][hapmap]
rs11004091	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11004092	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11004093	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11004109	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs11004112	1.00[YRI][hapmap]
rs11004115	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11497832	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243886	1.00[YRI][hapmap]
rs12245040	1.00[YRI][hapmap]
rs12245176	1.00[YRI][hapmap]
rs12245299	1.00[YRI][hapmap]
rs12245360	1.00[YRI][hapmap]
rs12248502	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12248588	1.00[YRI][hapmap]
rs12249403	1.00[YRI][hapmap]
rs12250179	1.00[YRI][hapmap]
rs12250464	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12254026	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12254547	1.00[YRI][hapmap]
rs12255000	1.00[YRI][hapmap]
rs12255063	1.00[YRI][hapmap]
rs12255589	1.00[YRI][hapmap]
rs12256914	0.82[AFR][1000 genomes]
rs12257647	1.00[YRI][hapmap]
rs12258568	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12261101	0.82[YRI][hapmap]
rs12261390	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12263499	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12265459	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12265702	1.00[YRI][hapmap]
rs12265890	1.00[YRI][hapmap]
rs12266947	1.00[YRI][hapmap]
rs12267014	1.00[YRI][hapmap]
rs12268401	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12268555	1.00[YRI][hapmap]
rs12269047	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73239985	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241712	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241714	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241716	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241718	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9651344	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8667	chr10:55803106-56022647	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv428557	chr10:55815334-55988225	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv870252	chr10:55823123-56029435	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1035173	chr10:55847066-56005288	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv467214	chr10:55881720-55948714	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv430232	chr10:55883194-56027294	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv895431	chr10:55898144-55955444	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2829924	chr10:55906112-56038831	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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