Variant report

Variant	rs12271529
Chromosome Location	chr11:75203825-75203826
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75203200..75205117-chr11:75206279..75208422,2	MCF-7	breast:
2	chr11:75186423..75188493-chr11:75202325..75205145,2	K562	blood:
3	chr11:75202940..75204464-chr11:75209500..75211854,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12282574	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12576703	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1894211	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1894212	1.00[EUR][1000 genomes]
rs2276442	1.00[EUR][1000 genomes]
rs73494848	0.86[ASN][1000 genomes]
rs954446	1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75190400-75207400	Weak transcription	Fetal Stomach	stomach
2	chr11:75199400-75207000	Weak transcription	Adipose Nuclei	Adipose
3	chr11:75199400-75209800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr11:75200000-75219600	Weak transcription	Fetal Brain Female	brain
5	chr11:75201400-75207000	Weak transcription	Fetal Intestine Large	intestine
6	chr11:75201600-75204000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr11:75201800-75204400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:75201800-75206800	Weak transcription	HepG2	liver
9	chr11:75202000-75207000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:75202000-75207000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:75202200-75207000	Weak transcription	HSMMtube	muscle
12	chr11:75202200-75207200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:75202200-75208800	Weak transcription	HSMM	muscle
14	chr11:75202400-75210000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:75202600-75204200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr11:75202600-75206800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr11:75202600-75207000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr11:75202800-75204000	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr11:75203000-75204000	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr11:75203000-75204000	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr11:75203000-75204200	Enhancers	Primary hematopoietic stem cells	blood
22	chr11:75203000-75204400	Enhancers	Spleen	Spleen
23	chr11:75203200-75204000	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr11:75203200-75204800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:75203400-75204000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr11:75203400-75204600	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr11:75203400-75205600	Strong transcription	Fetal Intestine Small	intestine
28	chr11:75203400-75207000	Weak transcription	Psoas Muscle	Psoas
29	chr11:75203600-75204000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:75203600-75204200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr11:75203600-75204800	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr11:75203600-75206600	Weak transcription	A549	lung
33	chr11:75203600-75206800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr11:75203600-75206800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr11:75203600-75206800	Weak transcription	Placenta	Placenta
36	chr11:75203600-75206800	Weak transcription	Lung	lung
37	chr11:75203600-75207000	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr11:75203600-75207200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:75203600-75207200	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr11:75203600-75209000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:75203800-75204400	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr11:75203800-75206800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr11:75203800-75206800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr11:75203800-75206800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:75203800-75207000	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr11:75203800-75207000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr11:75203800-75207000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr11:75203800-75207200	Weak transcription	HUVEC	blood vessel
49	chr11:75203800-75208200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr11:75203800-75208800	Weak transcription	Hela-S3	cervix

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