Variant report

Variant	rs1894211
Chromosome Location	chr11:75211196-75211197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:75187485..75189633-chr11:75210513..75213163,2	MCF-7	breast:
2	chr11:75209740..75211543-chr11:75211641..75214647,3	MCF-7	breast:
3	chr11:75035315..75036959-chr11:75209813..75212313,2	MCF-7	breast:
4	chr11:75202940..75204464-chr11:75209500..75211854,2	MCF-7	breast:
5	chr11:75210912..75212429-chr11:75217763..75219597,2	K562	blood:
6	chr11:75209084..75211834-chr11:75212223..75216689,4	K562	blood:
7	chr11:75210731..75213962-chr11:75224563..75227666,3	MCF-7	breast:
8	chr11:75210912..75213100-chr11:75217815..75220736,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000254460	Chromatin interaction
ENSG00000158555	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12271529	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12282574	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12576703	1.00[EUR][1000 genomes]
rs1894212	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2276442	1.00[EUR][1000 genomes]
rs954446	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75200000-75219600	Weak transcription	Fetal Brain Female	brain
2	chr11:75203800-75217800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr11:75203800-75219200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:75204000-75216600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr11:75204200-75213400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:75206800-75214200	Enhancers	Placenta	Placenta
7	chr11:75207400-75216400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:75207600-75216400	Weak transcription	Left Ventricle	heart
9	chr11:75208200-75212200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:75208400-75212400	Enhancers	HSMMtube	muscle
11	chr11:75208800-75211200	Genic enhancers	HepG2	liver
12	chr11:75209000-75212200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:75209000-75213400	Enhancers	Adipose Nuclei	Adipose
14	chr11:75209200-75211200	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr11:75209200-75211400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:75209200-75211400	Enhancers	Colon Smooth Muscle	Colon
17	chr11:75209200-75211600	Flanking Active TSS	Hela-S3	cervix
18	chr11:75209200-75211800	Enhancers	NHDF-Ad	bronchial
19	chr11:75209200-75212800	Enhancers	HMEC	breast
20	chr11:75209200-75213000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:75209200-75213400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:75209400-75211200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:75209400-75211600	Enhancers	NHLF	lung
24	chr11:75209400-75212400	Enhancers	Fetal Muscle Leg	muscle
25	chr11:75209400-75212600	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr11:75209600-75211200	Genic enhancers	Fetal Intestine Small	intestine
27	chr11:75209600-75211400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:75209600-75212400	Enhancers	NHEK	skin
29	chr11:75209600-75212600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:75209600-75212800	Enhancers	Fetal Muscle Trunk	muscle
31	chr11:75209800-75211200	Enhancers	Rectal Smooth Muscle	rectum
32	chr11:75209800-75211400	Enhancers	Right Ventricle	heart
33	chr11:75209800-75211400	Enhancers	Stomach Smooth Muscle	stomach
34	chr11:75209800-75211400	Enhancers	K562	blood
35	chr11:75209800-75211600	Flanking Active TSS	A549	lung
36	chr11:75209800-75212600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:75210000-75211400	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr11:75210000-75211600	Enhancers	Ovary	ovary
39	chr11:75210000-75211800	Enhancers	Fetal Stomach	stomach
40	chr11:75210000-75212200	Enhancers	Right Atrium	heart
41	chr11:75210200-75211200	Enhancers	NH-A	brain
42	chr11:75210200-75216400	Weak transcription	Psoas Muscle	Psoas
43	chr11:75210400-75211400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr11:75210400-75219400	Weak transcription	Pancreas	Pancrea
45	chr11:75210600-75211200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr11:75210600-75211200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
47	chr11:75210600-75211200	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr11:75210600-75211400	Enhancers	Primary monocytes fromperipheralblood	blood
49	chr11:75210600-75211400	Enhancers	Monocytes-CD14+_RO01746	blood
50	chr11:75210600-75211800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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