Variant report

Variant	rs1894212
Chromosome Location	chr11:75214831-75214832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75209084..75211834-chr11:75212223..75216689,4	K562	blood:
2	chr11:75213071..75214995-chr11:75295605..75297967,2	K562	blood:
3	chr11:75211217..75212883-chr11:75213293..75214975,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12271529	1.00[EUR][1000 genomes]
rs12282574	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12576703	1.00[EUR][1000 genomes]
rs1894211	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2276442	1.00[EUR][1000 genomes]
rs954446	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1894212	SLCO2B1	cis	lymphoblastoid	seeQTL

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75200000-75219600	Weak transcription	Fetal Brain Female	brain
2	chr11:75203800-75217800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr11:75203800-75219200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:75204000-75216600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr11:75207400-75216400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:75207600-75216400	Weak transcription	Left Ventricle	heart
7	chr11:75210200-75216400	Weak transcription	Psoas Muscle	Psoas
8	chr11:75210400-75219400	Weak transcription	Pancreas	Pancrea
9	chr11:75211200-75216400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr11:75211200-75219800	Weak transcription	Esophagus	oesophagus
11	chr11:75211400-75216600	Weak transcription	K562	blood
12	chr11:75211400-75216800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr11:75211400-75217800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:75211400-75218200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr11:75211800-75216400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr11:75212000-75216400	Weak transcription	HSMM	muscle
17	chr11:75212000-75217000	Weak transcription	Lung	lung
18	chr11:75212200-75215000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:75212200-75216000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr11:75212200-75216600	Weak transcription	Right Atrium	heart
21	chr11:75212200-75218400	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr11:75212600-75216400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr11:75212600-75219200	Weak transcription	A549	lung
24	chr11:75212600-75227400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:75212800-75216400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr11:75212800-75217400	Weak transcription	Spleen	Spleen
27	chr11:75213000-75215800	Weak transcription	Fetal Intestine Large	intestine
28	chr11:75213000-75217200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:75213200-75215200	Enhancers	GM12878-XiMat	blood
30	chr11:75213400-75216800	Weak transcription	HSMMtube	muscle
31	chr11:75213600-75215600	Enhancers	Primary B cells from peripheral blood	blood
32	chr11:75213600-75216200	Strong transcription	Fetal Intestine Small	intestine
33	chr11:75213800-75216400	Weak transcription	Hela-S3	cervix
34	chr11:75213800-75217000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr11:75214400-75215400	Strong transcription	HepG2	liver
36	chr11:75214600-75215000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr11:75214600-75215200	Enhancers	Adipose Nuclei	Adipose
38	chr11:75214600-75217800	Genic enhancers	Placenta	Placenta
39	chr11:75214800-75215200	Enhancers	Monocytes-CD14+_RO01746	blood
40	chr11:75214800-75215400	Enhancers	Fetal Muscle Leg	muscle
41	chr11:75214800-75217200	Enhancers	Primary monocytes fromperipheralblood	blood

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