Variant report

Variant	rs12272338
Chromosome Location	chr11:45797864-45797865
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11038654	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038656	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12271020	1.00[EUR][1000 genomes]
rs12272905	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12282904	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12289812	1.00[EUR][1000 genomes]
rs12291940	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12295162	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2457964	0.85[EUR][1000 genomes]
rs2593736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2593743	0.85[EUR][1000 genomes]
rs2593744	0.85[EUR][1000 genomes]
rs2593748	0.85[EUR][1000 genomes]
rs28826038	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58042321	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73466377	1.00[EUR][1000 genomes]
rs73468335	0.84[EUR][1000 genomes]
rs7480518	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45793600-45802200	Weak transcription	Spleen	Spleen
2	chr11:45797400-45799000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:45797600-45799600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:45797600-45799600	Enhancers	Adipose Nuclei	Adipose
5	chr11:45797800-45798000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:45797800-45799000	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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