Variant report

Variant	rs2593748
Chromosome Location	chr11:45711140-45711141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11038654	0.85[EUR][1000 genomes]
rs11038656	0.85[EUR][1000 genomes]
rs12271020	0.85[EUR][1000 genomes]
rs12272338	0.85[EUR][1000 genomes]
rs12272905	0.85[EUR][1000 genomes]
rs12282904	0.85[EUR][1000 genomes]
rs12289812	0.85[EUR][1000 genomes]
rs12291940	0.85[EUR][1000 genomes]
rs12295162	0.85[EUR][1000 genomes]
rs2457964	1.00[EUR][1000 genomes]
rs2593736	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2593743	1.00[EUR][1000 genomes]
rs2593744	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28826038	0.85[EUR][1000 genomes]
rs73466377	0.85[EUR][1000 genomes]
rs7480518	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467870	chr11:45684557-45757401	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv554199	chr11:45684557-45757401	Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45700800-45717800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:45709600-45717200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:45710400-45711800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:45710600-45711200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr11:45710600-45712000	Weak transcription	Colon Smooth Muscle	Colon
6	chr11:45710600-45715400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:45710800-45716200	Weak transcription	Fetal Heart	heart
8	chr11:45711000-45715800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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