Variant report

Variant	rs12272346
Chromosome Location	chr11:58055186-58055187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11229338	0.87[AFR][1000 genomes]
rs11229339	1.00[AFR][1000 genomes]
rs11229340	1.00[AFR][1000 genomes]
rs11229370	0.93[AFR][1000 genomes]
rs12274230	0.93[AFR][1000 genomes]
rs12274849	0.93[AFR][1000 genomes]
rs12275740	1.00[YRI][hapmap]
rs12280751	0.93[AFR][1000 genomes]
rs12283108	0.93[AFR][1000 genomes]
rs12284059	0.93[AFR][1000 genomes]
rs12288748	1.00[YRI][hapmap]
rs12290539	1.00[AFR][1000 genomes]
rs12290630	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs12291951	0.93[AFR][1000 genomes]
rs12293134	0.93[AFR][1000 genomes]
rs12293908	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs60523906	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1039453	chr11:57924680-58119650	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv541051	chr11:57924680-58119650	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58044600-58059600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links