Variant report
| Variant | rs12293908 |
|---|---|
| Chromosome Location | chr11:58128326-58128327 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No data |
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| Variant related genes | Relation type |
|---|---|
| OR5B17 | TF binding region |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs11229338 | 0.93[AFR][1000 genomes] |
| rs11229339 | 0.93[AFR][1000 genomes] |
| rs11229340 | 0.93[AFR][1000 genomes] |
| rs11229370 | 1.00[AFR][1000 genomes] |
| rs12272346 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes] |
| rs12274230 | 1.00[AFR][1000 genomes] |
| rs12274849 | 1.00[AFR][1000 genomes] |
| rs12275740 | 1.00[YRI][hapmap] |
| rs12280751 | 1.00[AFR][1000 genomes] |
| rs12283108 | 1.00[AFR][1000 genomes] |
| rs12284059 | 1.00[AFR][1000 genomes] |
| rs12288748 | 1.00[YRI][hapmap] |
| rs12290539 | 0.93[AFR][1000 genomes] |
| rs12290630 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs12291951 | 1.00[AFR][1000 genomes] |
| rs12293134 | 1.00[AFR][1000 genomes] |
| rs60523906 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054205 | chr11:57544264-58358509 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
