Variant report

Variant	rs12275740
Chromosome Location	chr11:58130018-58130019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11229338	0.93[AFR][1000 genomes]
rs11229339	0.93[AFR][1000 genomes]
rs11229340	0.93[AFR][1000 genomes]
rs11229370	1.00[AFR][1000 genomes]
rs12272346	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs12274230	1.00[AFR][1000 genomes]
rs12274849	1.00[AFR][1000 genomes]
rs12280751	1.00[AFR][1000 genomes]
rs12283108	1.00[AFR][1000 genomes]
rs12284059	1.00[AFR][1000 genomes]
rs12288748	1.00[YRI][hapmap]
rs12290539	0.93[AFR][1000 genomes]
rs12290630	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12291951	1.00[AFR][1000 genomes]
rs12293134	1.00[AFR][1000 genomes]
rs12293908	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs60523906	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv517849	chr11:58129053-58264181	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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