Variant report
| Variant | rs12272493 |
|---|---|
| Chromosome Location | chr11:32509093-32509094 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs17749506 | 1.00[ASN][1000 genomes] |
| rs3899020 | 1.00[ASN][1000 genomes] |
| rs4078090 | 1.00[ASN][1000 genomes] |
| rs5030174 | 1.00[ASN][1000 genomes] |
| rs5030198 | 0.81[TSI][hapmap];1.00[ASN][1000 genomes] |
| rs5030199 | 1.00[ASN][1000 genomes] |
| rs5030212 | 1.00[ASN][1000 genomes] |
| rs5030225 | 1.00[ASN][1000 genomes] |
| rs5030242 | 1.00[ASN][1000 genomes] |
| rs5030244 | 0.81[TSI][hapmap];1.00[ASN][1000 genomes] |
| rs5030247 | 1.00[ASN][1000 genomes] |
| rs5030263 | 1.00[ASN][1000 genomes] |
| rs5030265 | 1.00[ASN][1000 genomes] |
| rs5030267 | 1.00[ASN][1000 genomes] |
| rs72893503 | 1.00[ASN][1000 genomes] |
| rs72893539 | 1.00[ASN][1000 genomes] |
| rs72893546 | 1.00[ASN][1000 genomes] |
| rs72893548 | 1.00[ASN][1000 genomes] |
| rs72905032 | 1.00[ASN][1000 genomes] |
| rs72905039 | 1.00[ASN][1000 genomes] |
| rs72905047 | 1.00[ASN][1000 genomes] |
| rs72905081 | 1.00[ASN][1000 genomes] |
| rs72905088 | 1.00[ASN][1000 genomes] |
| rs72906988 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72908924 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72908926 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72908928 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72908989 | 1.00[ASN][1000 genomes] |
| rs72909438 | 1.00[ASN][1000 genomes] |
| rs72909441 | 1.00[ASN][1000 genomes] |
| rs72909473 | 1.00[ASN][1000 genomes] |
| rs72909474 | 1.00[ASN][1000 genomes] |
| rs72909477 | 1.00[ASN][1000 genomes] |
| rs72909479 | 1.00[ASN][1000 genomes] |
| rs72909480 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832108 | chr11:32395937-32560583 | Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:32500800-32510200 | Weak transcription | Right Atrium | heart |
