Variant report

Variant	rs72906988
Chromosome Location	chr11:32498655-32498656
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12272493	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17749506	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3899020	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4078090	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs5030174	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs5030198	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs5030199	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs5030212	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs5030225	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs5030242	1.00[ASN][1000 genomes]
rs5030244	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs5030247	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs5030263	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs5030265	1.00[ASN][1000 genomes]
rs5030267	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72893503	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72893539	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72893546	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72893548	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72905032	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72905039	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72905047	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72905081	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72905083	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72905088	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908989	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72909438	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72909441	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72909473	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72909474	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72909477	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72909479	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72909480	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32488400-32499200	Weak transcription	K562	blood
2	chr11:32494000-32499200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:32494200-32499200	Weak transcription	Dnd41	blood

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