Variant report

Variant	rs4078090
Chromosome Location	chr11:32534631-32534632
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32533642..32535165-chr11:32537194..32539014,2	K562	blood:
2	chr11:32532188..32535281-chr11:32537450..32541438,3	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12272493	1.00[ASN][1000 genomes]
rs17749506	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3899020	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs5030174	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs5030198	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs5030199	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs5030212	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs5030225	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs5030242	1.00[ASN][1000 genomes]
rs5030244	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs5030247	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs5030263	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs5030265	1.00[ASN][1000 genomes]
rs5030267	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs5030276	1.00[CEU][hapmap]
rs5030322	1.00[CEU][hapmap]
rs72893503	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72893539	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72893546	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72893548	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72905032	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72905039	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72905047	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72905081	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72905083	1.00[AFR][1000 genomes]
rs72905088	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72906988	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72908924	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72908926	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72908928	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72908989	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909438	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72909441	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72909473	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72909474	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72909477	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72909479	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72909480	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32534400-32535400	Enhancers	Ovary	ovary

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