Variant report

Variant	rs12273333
Chromosome Location	chr11:46956641-46956642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr11:46956454-46956655	HepG2	liver:	n/a	n/a
2	GATA3	chr11:46956625-46956911	SH-SY5Y	brain:	n/a	chr11:46956773-46956780 chr11:46956770-46956782 chr11:46956771-46956780 chr11:46956773-46956780 chr11:46956768-46956784 chr11:46956773-46956780 chr11:46956771-46956781 chr11:46956762-46956779 chr11:46956771-46956780

Variant related genes	Relation type
C11orf49	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10838638	0.86[YRI][hapmap];0.90[AMR][1000 genomes]
rs11039048	0.90[AMR][1000 genomes]
rs11039074	0.81[YRI][hapmap]
rs11039097	0.84[YRI][hapmap]
rs11488791	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12224831	0.90[AMR][1000 genomes]
rs12274845	0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12280455	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12290283	0.83[AMR][1000 genomes]
rs12291377	0.95[AMR][1000 genomes]
rs2035067	0.84[YRI][hapmap];0.90[AMR][1000 genomes]
rs4752814	0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4752962	0.81[YRI][hapmap]
rs57683872	0.89[AMR][1000 genomes]
rs59520560	1.00[AMR][1000 genomes]
rs60741480	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6485713	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6485718	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7108902	0.84[YRI][hapmap]
rs7117243	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7117590	0.81[YRI][hapmap];0.89[AMR][1000 genomes]
rs7123059	1.00[AMR][1000 genomes]
rs73462027	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7479189	0.85[YRI][hapmap]
rs7931260	0.84[YRI][hapmap]
rs7935192	0.81[YRI][hapmap];0.89[AMR][1000 genomes]
rs7940468	1.00[AMR][1000 genomes]
rs7944021	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7945052	0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9804415	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9971621	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46944800-46958200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:46952000-46957800	Weak transcription	NHLF	lung
3	chr11:46952200-46957200	Weak transcription	A549	lung
4	chr11:46952200-46957600	Weak transcription	Hela-S3	cervix
5	chr11:46952200-46957800	Weak transcription	NHEK	skin
6	chr11:46952400-46957000	Weak transcription	Fetal Intestine Small	intestine
7	chr11:46952400-46957600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr11:46952400-46957600	Weak transcription	Fetal Intestine Large	intestine
9	chr11:46952400-46957800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:46952400-46957800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:46952400-46957800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr11:46952400-46957800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:46952400-46957800	Weak transcription	Stomach Mucosa	stomach
14	chr11:46952400-46957800	Weak transcription	HepG2	liver
15	chr11:46952600-46957800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:46954000-46957600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr11:46954600-46957800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:46955800-46956800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:46955800-46957600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:46956200-46957000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:46956400-46957800	Weak transcription	NHDF-Ad	bronchial

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