Variant report

Variant	rs12275317
Chromosome Location	chr11:23577330-23577331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11824733	1.00[ASN][1000 genomes]
rs11828531	1.00[ASN][1000 genomes]
rs12795099	1.00[ASN][1000 genomes]
rs35832632	1.00[ASN][1000 genomes]
rs36082232	1.00[ASN][1000 genomes]
rs58028141	1.00[ASN][1000 genomes]
rs7113689	1.00[ASN][1000 genomes]
rs7130543	1.00[ASN][1000 genomes]
rs73429952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73429967	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038101	chr11:23556680-23685548	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv553757	chr11:23564329-23896729	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv467737	chr11:23564843-23584367	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv553758	chr11:23564843-23584367	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv467738	chr11:23564843-23585876	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv553759	chr11:23564843-23585876	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv467740	chr11:23569160-23677246	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv553760	chr11:23569160-23677246	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3469052	chr11:23575693-23584202	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3469064	chr11:23575693-23584202	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23561600-23577600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:23575600-23577600	Enhancers	HUVEC	blood vessel
3	chr11:23576400-23577400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:23576800-23577400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:23576800-23577600	Enhancers	Hela-S3	cervix
6	chr11:23577000-23577600	Enhancers	NH-A	brain
7	chr11:23577200-23578400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:23577200-23578400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr11:23577200-23578600	Enhancers	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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