Variant report

Variant	rs12795099
Chromosome Location	chr11:23561649-23561650
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11824733	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828531	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275317	1.00[ASN][1000 genomes]
rs35832632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36082232	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58028141	1.00[ASN][1000 genomes]
rs7113689	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130543	1.00[ASN][1000 genomes]
rs73429952	1.00[ASN][1000 genomes]
rs73429967	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832087	chr11:23404474-23569183	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1038101	chr11:23556680-23685548	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23561000-23562600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:23561000-23563200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr11:23561200-23561800	Enhancers	Stomach Mucosa	stomach
4	chr11:23561200-23561800	Enhancers	NH-A	brain
5	chr11:23561200-23562200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:23561200-23562200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:23561400-23561800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:23561400-23561800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:23561400-23561800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:23561400-23561800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:23561400-23561800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:23561400-23561800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr11:23561400-23561800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:23561400-23561800	Flanking Active TSS	Colon Smooth Muscle	Colon
15	chr11:23561400-23561800	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr11:23561400-23561800	Enhancers	Rectal Smooth Muscle	rectum
17	chr11:23561400-23561800	Enhancers	Hela-S3	cervix
18	chr11:23561400-23561800	Enhancers	Osteobl	bone
19	chr11:23561400-23562200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:23561400-23562200	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr11:23561400-23564000	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr11:23561400-23564000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr11:23561600-23561800	Enhancers	Primary hematopoietic stem cells	blood
24	chr11:23561600-23562200	Enhancers	Adipose Nuclei	Adipose
25	chr11:23561600-23562200	Enhancers	Fetal Muscle Leg	muscle
26	chr11:23561600-23562600	Flanking Active TSS	Dnd41	blood
27	chr11:23561600-23562800	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr11:23561600-23564000	Weak transcription	Fetal Intestine Large	intestine
29	chr11:23561600-23577600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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