Variant report

Variant	rs73429967
Chromosome Location	chr11:23579175-23579176
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11824733	1.00[ASN][1000 genomes]
rs11828531	1.00[ASN][1000 genomes]
rs12275317	1.00[ASN][1000 genomes]
rs12795099	1.00[ASN][1000 genomes]
rs35832632	1.00[ASN][1000 genomes]
rs36082232	1.00[ASN][1000 genomes]
rs4603303	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58028141	1.00[ASN][1000 genomes]
rs7113689	1.00[ASN][1000 genomes]
rs7130543	1.00[ASN][1000 genomes]
rs73429952	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038101	chr11:23556680-23685548	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv553757	chr11:23564329-23896729	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv467737	chr11:23564843-23584367	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv553758	chr11:23564843-23584367	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv467738	chr11:23564843-23585876	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv553759	chr11:23564843-23585876	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv467740	chr11:23569160-23677246	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv553760	chr11:23569160-23677246	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3469052	chr11:23575693-23584202	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3469064	chr11:23575693-23584202	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv818803	chr11:23577442-23582397	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	nsv825789	chr11:23578308-23583512	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv1804931	chr11:23578892-23591974	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	esv1811136	chr11:23578892-23591974	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv1808487	chr11:23578892-23592020	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
16	esv1815142	chr11:23578892-23592020	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23577600-23579800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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