Variant report

Variant	rs12276094
Chromosome Location	chr11:121212484-121212485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11218264	1.00[AMR][1000 genomes]
rs11601232	1.00[AMR][1000 genomes]
rs11602399	1.00[AMR][1000 genomes]
rs12280049	1.00[AMR][1000 genomes]
rs7125578	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898425	chr11:121115206-121215237	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121199400-121215800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:121209200-121213000	Enhancers	GM12878-XiMat	blood
3	chr11:121209200-121213600	Weak transcription	Brain Substantia Nigra	brain
4	chr11:121209400-121213600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:121209800-121213000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:121209800-121213000	Enhancers	Primary B cells from peripheral blood	blood
7	chr11:121210400-121212800	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr11:121211200-121212800	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr11:121211200-121213400	Enhancers	Primary B cells from cord blood	blood
10	chr11:121212000-121212600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr11:121212200-121212600	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr11:121212200-121212800	Enhancers	Duodenum Mucosa	Duodenum
13	chr11:121212200-121213000	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr11:121212400-121212600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:121212400-121212800	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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