Variant report

Variant	rs7125578
Chromosome Location	chr11:121211062-121211063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11218264	1.00[AMR][1000 genomes]
rs11601232	1.00[AMR][1000 genomes]
rs11602399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11607238	0.83[AFR][1000 genomes]
rs12276094	1.00[AMR][1000 genomes]
rs12280049	1.00[AMR][1000 genomes]
rs7121605	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898425	chr11:121115206-121215237	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121199400-121215800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:121205600-121212000	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr11:121209200-121213000	Enhancers	GM12878-XiMat	blood
4	chr11:121209200-121213600	Weak transcription	Brain Substantia Nigra	brain
5	chr11:121209400-121213600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:121209800-121213000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr11:121209800-121213000	Enhancers	Primary B cells from peripheral blood	blood
8	chr11:121210200-121211400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:121210200-121211800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:121210200-121212000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr11:121210200-121212200	Enhancers	Primary hematopoietic stem cells	blood
12	chr11:121210400-121212800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr11:121210600-121211200	Enhancers	Brain Germinal Matrix	brain
14	chr11:121210800-121211200	Flanking Active TSS	Primary B cells from cord blood	blood
15	chr11:121211000-121211200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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