Variant report

Variant	rs12276890
Chromosome Location	chr11:121112938-121112939
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10437696	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10790422	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11218235	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11218239	0.81[AMR][1000 genomes]
rs12289923	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12295531	0.83[AMR][1000 genomes]
rs12419764	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4144287	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4935766	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6589869	0.92[AMR][1000 genomes]
rs7108763	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7112341	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042295	chr11:121072853-121177079	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv975986	chr11:121106081-121115293	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv898424	chr11:121108865-121206354	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121104600-121113200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:121104800-121113200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:121105800-121113800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr11:121107800-121116800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:121108600-121116400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr11:121109400-121117000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:121111000-121113000	Enhancers	Fetal Stomach	stomach
8	chr11:121111400-121113200	Flanking Active TSS	HSMMtube	muscle
9	chr11:121111800-121114200	Weak transcription	Right Atrium	heart
10	chr11:121112000-121113200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr11:121112200-121114400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:121112200-121114400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:121112400-121113200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:121112400-121113200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr11:121112400-121113200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:121112400-121113400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr11:121112600-121113000	Enhancers	Fetal Muscle Trunk	muscle
18	chr11:121112600-121113200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr11:121112600-121113200	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr11:121112800-121114400	Enhancers	HSMM	muscle
21	chr11:121112800-121116600	Weak transcription	Fetal Muscle Leg	muscle
22	chr11:121112800-121116800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr11:121112800-121116800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:121112800-121116800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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