Variant report

Variant	rs7112341
Chromosome Location	chr11:121110846-121110847
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121097383..121099804-chr11:121109722..121112130,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10437696	0.81[AMR][1000 genomes]
rs10790422	0.81[AMR][1000 genomes]
rs11218235	0.81[AMR][1000 genomes]
rs12276890	0.85[AMR][1000 genomes]
rs12289923	0.86[AMR][1000 genomes]
rs12295531	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12419764	0.81[AMR][1000 genomes]
rs4935766	0.81[AMR][1000 genomes]
rs7108763	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042295	chr11:121072853-121177079	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv975986	chr11:121106081-121115293	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv898424	chr11:121108865-121206354	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121104600-121113200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:121104800-121113200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:121105600-121112800	Enhancers	Fetal Muscle Leg	muscle
4	chr11:121105800-121113800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr11:121106600-121112800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:121107800-121111000	Weak transcription	Right Atrium	heart
7	chr11:121107800-121112000	Weak transcription	Liver	Liver
8	chr11:121107800-121112400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:121107800-121116800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:121108000-121111200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:121108000-121111600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:121108600-121111000	Weak transcription	Esophagus	oesophagus
13	chr11:121108600-121111000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr11:121108600-121111600	Enhancers	HSMM	muscle
15	chr11:121108600-121112000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr11:121108600-121112000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:121108600-121112400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr11:121108600-121116400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr11:121109200-121111000	Weak transcription	Fetal Stomach	stomach
20	chr11:121109200-121112400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:121109400-121112000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr11:121109400-121117000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr11:121109600-121111200	Weak transcription	Osteobl	bone
24	chr11:121109600-121111800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:121110000-121112600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr11:121110000-121112800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr11:121110200-121111000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr11:121110400-121111000	Enhancers	H9 Cell Line	embryonic stem cell
29	chr11:121110400-121111000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:121110400-121111200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:121110400-121112000	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr11:121110600-121111000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:121110600-121111400	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr11:121110600-121111800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:121110800-121111400	Active TSS	HSMMtube	muscle
36	chr11:121110800-121111400	Enhancers	NHEK	skin
37	chr11:121110800-121112800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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